Index of /rnaseq/P_patens_Jan

strapdown: '/styling/strapdown/v/0.2/strapdown.js'};

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<h1>RNA-Seq data</h1>
<p>
This directory contains processed data files from the RNA-Seq experiment described in
the article titled
<a href="http://www.ncbi.nlm.nih.gov/pubmed/24777346">Genome-Wide
Analysis of Heat-Sensitive Alternative Splicing in Physcomitrella
patens</a>. 
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Name	Last modified	Size	Description
Parent Directory		-
H2-101.bam	2017-07-25 15:39	1.2G	Binary alignments file
H1-101.bam	2017-07-25 15:39	1.2G	Binary alignments file
C-101.bam	2017-07-25 15:39	835M	Binary alignments file
H2-101.sm.bam	2017-07-25 15:38	833M	Binary alignments file
H1-101.sm.bam	2017-07-25 15:40	821M	Binary alignments file
C-101.sm.bam	2017-07-25 15:40	643M	Binary alignments file
H1-76.bam	2017-07-25 15:41	576M	Binary alignments file
H2-76.bam	2017-07-25 15:39	549M	Binary alignments file
H2-101.mm.bam	2017-07-25 15:40	360M	Binary alignments file
C-76.bam	2017-07-25 15:40	359M	Binary alignments file
H1-101.mm.bam	2017-07-25 15:41	357M	Binary alignments file
H1-76.sm.bam	2017-07-25 15:41	334M	Binary alignments file
H2-76.sm.bam	2017-07-25 15:40	328M	Binary alignments file
C-76.sm.bam	2017-07-25 15:41	269M	Binary alignments file
H1-76.mm.bam	2017-07-25 15:41	242M	Binary alignments file
H2-76.mm.bam	2017-07-25 15:41	221M	Binary alignments file
C-101.mm.bam	2017-07-25 15:41	192M	Binary alignments file
C-76.mm.bam	2017-07-25 15:40	90M	Binary alignments file
H1-101.bedgraph.gz	2017-07-25 15:39	51M	BedGraph (wiggle) format file
H2-101.bedgraph.gz	2017-07-25 15:41	50M	BedGraph (wiggle) format file
C-101.bedgraph.gz	2017-07-25 15:41	45M	BedGraph (wiggle) format file
H2-101.sm.bedgraph.gz	2017-07-25 15:39	45M	BedGraph (wiggle) format file
H1-101.sm.bedgraph.gz	2017-07-25 15:41	45M	BedGraph (wiggle) format file
C-101.sm.bedgraph.gz	2017-07-25 15:40	42M	BedGraph (wiggle) format file
H1-76.bedgraph.gz	2017-07-25 15:41	39M	BedGraph (wiggle) format file
H2-76.bedgraph.gz	2017-07-25 15:41	35M	BedGraph (wiggle) format file
H1-76.sm.bedgraph.gz	2017-07-25 15:41	31M	BedGraph (wiggle) format file
C-76.bedgraph.gz	2017-07-25 15:41	30M	BedGraph (wiggle) format file
H2-76.sm.bedgraph.gz	2017-07-25 15:41	29M	BedGraph (wiggle) format file
C-76.sm.bedgraph.gz	2017-07-25 15:41	27M	BedGraph (wiggle) format file
H1-101.bed	2017-07-25 15:38	10M	Annotation or junction file
H2-101.bed	2017-07-25 15:41	9.7M	Annotation or junction file
C-101.bed	2017-07-25 15:40	9.0M	Annotation or junction file
H1-76.mm.bedgraph.gz	2017-07-25 15:41	7.6M	BedGraph (wiggle) format file
H1-101.mm.bedgraph.gz	2017-07-25 15:39	7.0M	BedGraph (wiggle) format file
H1-76.bed	2017-07-25 15:41	6.7M	Annotation or junction file
H2-101.mm.bedgraph.gz	2017-07-25 15:38	6.4M	BedGraph (wiggle) format file
H2-76.bed	2017-07-25 15:41	6.3M	Annotation or junction file
C-76.bed	2017-07-25 15:40	6.0M	Annotation or junction file
H2-76.mm.bedgraph.gz	2017-07-25 15:41	5.4M	BedGraph (wiggle) format file
C-101.mm.bedgraph.gz	2017-07-25 15:40	5.0M	BedGraph (wiggle) format file
C-76.mm.bedgraph.gz	2017-07-25 15:41	3.4M	BedGraph (wiggle) format file
H1-101.bed.gz	2017-07-25 15:39	2.6M	Annotation or junction file
H2-101.bed.gz	2017-07-25 15:40	2.4M	Annotation or junction file
H1-101.FJ.bed.gz	2017-07-25 15:39	2.3M	Loraine Lab FindJunctions file
C-101.bed.gz	2017-07-25 15:39	2.3M	Annotation or junction file
H2-101.FJ.bed.gz	2017-07-25 15:40	2.2M	Loraine Lab FindJunctions file
C-101.FJ.bed.gz	2017-07-25 15:40	2.0M	Loraine Lab FindJunctions file
H1-76.bed.gz	2017-07-25 15:39	1.7M	Annotation or junction file
H2-76.bed.gz	2017-07-25 15:40	1.6M	Annotation or junction file
H1-76.FJ.bed.gz	2017-07-25 15:41	1.5M	Loraine Lab FindJunctions file
C-76.bed.gz	2017-07-25 15:39	1.5M	Annotation or junction file
H2-76.FJ.bed.gz	2017-07-25 15:39	1.4M	Loraine Lab FindJunctions file
C-76.FJ.bed.gz	2017-07-25 15:38	1.4M	Loraine Lab FindJunctions file
H1-76.bam.bai	2017-07-25 15:39	913K	Index for binary alignments (bam) file
H2-76.bam.bai	2017-07-25 15:39	862K	Index for binary alignments (bam) file
H1-101.bam.bai	2017-07-25 15:39	859K	Index for binary alignments (bam) file
H2-101.bam.bai	2017-07-25 15:40	822K	Index for binary alignments (bam) file
H1-101.sm.bam.bai	2017-07-25 15:41	765K	Index for binary alignments (bam) file
H1-76.sm.bam.bai	2017-07-25 15:41	757K	Index for binary alignments (bam) file
H2-101.sm.bam.bai	2017-07-25 15:39	743K	Index for binary alignments (bam) file
C-101.bam.bai	2017-07-25 15:38	734K	Index for binary alignments (bam) file
C-76.bam.bai	2017-07-25 15:40	729K	Index for binary alignments (bam) file
H2-76.sm.bam.bai	2017-07-25 15:39	727K	Index for binary alignments (bam) file
C-101.sm.bam.bai	2017-07-25 15:39	702K	Index for binary alignments (bam) file
C-76.sm.bam.bai	2017-07-25 15:40	683K	Index for binary alignments (bam) file
H1-76.mm.bam.bai	2017-07-25 15:41	681K	Index for binary alignments (bam) file
H1-101.mm.bam.bai	2017-07-25 15:40	643K	Index for binary alignments (bam) file
H2-76.mm.bam.bai	2017-07-25 15:41	626K	Index for binary alignments (bam) file
H2-101.mm.bam.bai	2017-07-25 15:38	601K	Index for binary alignments (bam) file
C-101.mm.bam.bai	2017-07-25 15:41	519K	Index for binary alignments (bam) file
C-76.mm.bam.bai	2017-07-25 15:39	451K	Index for binary alignments (bam) file
H1-76.bedgraph.gz.tbi	2017-07-25 15:38	274K	BedGraph (wiggle) format file
H2-76.bedgraph.gz.tbi	2017-07-25 15:38	258K	BedGraph (wiggle) format file
H1-101.bedgraph.gz.tbi	2017-07-25 15:40	256K	BedGraph (wiggle) format file
H2-101.bedgraph.gz.tbi	2017-07-25 15:41	245K	BedGraph (wiggle) format file
H1-101.sm.bedgraph.gz.tbi	2017-07-25 15:39	225K	BedGraph (wiggle) format file
H1-76.sm.bedgraph.gz.tbi	2017-07-25 15:40	223K	BedGraph (wiggle) format file
H2-101.sm.bedgraph.gz.tbi	2017-07-25 15:40	217K	BedGraph (wiggle) format file
C-101.bedgraph.gz.tbi	2017-07-25 15:40	213K	BedGraph (wiggle) format file
H2-76.sm.bedgraph.gz.tbi	2017-07-25 15:40	212K	BedGraph (wiggle) format file
C-76.bedgraph.gz.tbi	2017-07-25 15:39	211K	BedGraph (wiggle) format file
C-101.sm.bedgraph.gz.tbi	2017-07-25 15:41	201K	BedGraph (wiggle) format file
C-76.sm.bedgraph.gz.tbi	2017-07-25 15:39	195K	BedGraph (wiggle) format file
H1-76.mm.bedgraph.gz.tbi	2017-07-25 15:41	195K	BedGraph (wiggle) format file
H1-101.mm.bedgraph.gz.tbi	2017-07-25 15:40	180K	BedGraph (wiggle) format file
H2-76.mm.bedgraph.gz.tbi	2017-07-25 15:40	174K	BedGraph (wiggle) format file
H2-101.mm.bedgraph.gz.tbi	2017-07-25 15:39	165K	BedGraph (wiggle) format file
H2-94.bam	2017-07-25 15:40	136K	Binary alignments file
C-101.mm.bedgraph.gz.tbi	2017-07-25 15:38	134K	BedGraph (wiggle) format file
H1-101.bed.gz.tbi	2017-07-25 15:39	129K	Tabix index file
H2-101.bed.gz.tbi	2017-07-25 15:40	127K	Tabix index file
C-101.bed.gz.tbi	2017-07-25 15:41	125K	Tabix index file
H1-101.FJ.bed.gz.tbi	2017-07-25 15:41	123K	Tabix index file
H2-101.FJ.bed.gz.tbi	2017-07-25 15:40	121K	Tabix index file
C-101.FJ.bed.gz.tbi	2017-07-25 15:41	120K	Tabix index file
H1-76.bed.gz.tbi	2017-07-25 15:41	116K	Tabix index file
H2-76.bed.gz.tbi	2017-07-25 15:39	113K	Tabix index file
H2-94.bam.bai	2017-07-25 15:41	112K	Index for binary alignments (bam) file
C-76.bed.gz.tbi	2017-07-25 15:39	111K	Tabix index file
H1-76.FJ.bed.gz.tbi	2017-07-25 15:40	110K	Tabix index file
H1-94.bam	2017-07-25 15:41	109K	Binary alignments file
H2-76.FJ.bed.gz.tbi	2017-07-25 15:41	108K	Tabix index file
C-76.mm.bedgraph.gz.tbi	2017-07-25 15:39	106K	BedGraph (wiggle) format file
C-76.FJ.bed.gz.tbi	2017-07-25 15:38	106K	Tabix index file
H2-94.sm.bam.bai	2017-07-25 15:41	106K	Index for binary alignments (bam) file
C-94.bam	2017-07-25 15:39	105K	Binary alignments file
H2-94.sm.bam	2017-07-25 15:41	97K	Binary alignments file
H1-94.bam.bai	2017-07-25 15:39	90K	Index for binary alignments (bam) file
H1-75.bam.bai	2017-07-25 15:41	86K	Index for binary alignments (bam) file
H1-94.sm.bam.bai	2017-07-25 15:39	84K	Index for binary alignments (bam) file
H1-75.sm.bam.bai	2017-07-25 15:39	83K	Index for binary alignments (bam) file
C-94.bam.bai	2017-07-25 15:39	78K	Index for binary alignments (bam) file
C-94.sm.bam.bai	2017-07-25 15:41	74K	Index for binary alignments (bam) file
C-75.bam.bai	2017-07-25 15:39	73K	Index for binary alignments (bam) file
H1-75.bam	2017-07-25 15:39	72K	Binary alignments file
C-94.sm.bam	2017-07-25 15:41	72K	Binary alignments file
H1-94.sm.bam	2017-07-25 15:39	70K	Binary alignments file
C-75.sm.bam.bai	2017-07-25 15:39	68K	Index for binary alignments (bam) file
C-75.bam	2017-07-25 15:40	65K	Binary alignments file
H2-94.mm.bam	2017-07-25 15:38	62K	Binary alignments file
H1-94.mm.bam	2017-07-25 15:39	61K	Binary alignments file
C-94.mm.bam	2017-07-25 15:39	57K	Binary alignments file
H2-75.bam.bai	2017-07-25 15:41	56K	Index for binary alignments (bam) file
H1-75.sm.bam	2017-07-25 15:38	54K	Binary alignments file
H2-75.sm.bam.bai	2017-07-25 15:39	53K	Index for binary alignments (bam) file
H2-94.bed	2017-07-25 15:40	50K	Annotation or junction file
C-75.sm.bam	2017-07-25 15:41	48K	Binary alignments file
H2-75.bam	2017-07-25 15:40	47K	Binary alignments file
H1-94.bed	2017-07-25 15:41	41K	Annotation or junction file
H1-75.mm.bam	2017-07-25 15:39	41K	Binary alignments file
C-75.mm.bam	2017-07-25 15:41	40K	Binary alignments file
H2-75.sm.bam	2017-07-25 15:40	38K	Binary alignments file
C-94.bed	2017-07-25 15:39	36K	Annotation or junction file
H2-75.mm.bam	2017-07-25 15:41	32K	Binary alignments file
H2-94.mm.bam.bai	2017-07-25 15:41	30K	Index for binary alignments (bam) file
H1-75.bed	2017-07-25 15:40	30K	Annotation or junction file
H1-94.mm.bam.bai	2017-07-25 15:41	29K	Index for binary alignments (bam) file
C-75.bed	2017-07-25 15:40	26K	Annotation or junction file
C-94.mm.bam.bai	2017-07-25 15:41	26K	Index for binary alignments (bam) file
C-75.mm.bam.bai	2017-07-25 15:38	23K	Index for binary alignments (bam) file
H1-75.mm.bam.bai	2017-07-25 15:39	22K	Index for binary alignments (bam) file
H2-75.mm.bam.bai	2017-07-25 15:41	21K	Index for binary alignments (bam) file
H2-94.bedgraph.gz	2017-07-25 15:39	15K	BedGraph (wiggle) format file
H2-75.bed	2017-07-25 15:40	14K	Annotation or junction file
H1-94.bedgraph.gz	2017-07-25 15:41	12K	BedGraph (wiggle) format file
H2-94.bed.gz	2017-07-25 15:39	12K	Annotation or junction file
C-94.bedgraph.gz	2017-07-25 15:41	11K	BedGraph (wiggle) format file
H2-94.sm.bedgraph.gz	2017-07-25 15:38	10K	BedGraph (wiggle) format file
H1-94.bed.gz	2017-07-25 15:40	9.4K	Annotation or junction file
H1-75.bedgraph.gz	2017-07-25 15:38	8.7K	BedGraph (wiggle) format file
C-94.bed.gz	2017-07-25 15:41	8.3K	Annotation or junction file
C-75.bedgraph.gz	2017-07-25 15:40	7.7K	BedGraph (wiggle) format file
H2-94.FJ.bed.gz	2017-07-25 15:41	7.7K	Loraine Lab FindJunctions file
C-94.sm.bedgraph.gz	2017-07-25 15:41	6.9K	BedGraph (wiggle) format file
H1-75.bed.gz	2017-07-25 15:41	6.9K	Annotation or junction file
H1-94.sm.bedgraph.gz	2017-07-25 15:39	6.8K	BedGraph (wiggle) format file
H2-94.bedgraph.gz.tbi	2017-07-25 15:40	6.7K	BedGraph (wiggle) format file
C-75.bed.gz	2017-07-25 15:40	6.3K	Annotation or junction file
H2-94.sm.bedgraph.gz.tbi	2017-07-25 15:39	5.9K	BedGraph (wiggle) format file
H2-94.mm.bedgraph.gz	2017-07-25 15:40	5.6K	BedGraph (wiggle) format file
C-94.FJ.bed.gz	2017-07-25 15:41	5.4K	Loraine Lab FindJunctions file
H1-75.sm.bedgraph.gz	2017-07-25 15:40	5.3K	BedGraph (wiggle) format file
H1-94.mm.bedgraph.gz	2017-07-25 15:38	5.3K	BedGraph (wiggle) format file
H1-94.FJ.bed.gz	2017-07-25 15:40	5.3K	Loraine Lab FindJunctions file
H2-94.bed.gz.tbi	2017-07-25 15:39	5.0K	Tabix index file
H1-94.bedgraph.gz.tbi	2017-07-25 15:41	4.9K	BedGraph (wiggle) format file
C-75.sm.bedgraph.gz	2017-07-25 15:41	4.5K	BedGraph (wiggle) format file
H1-75.FJ.bed.gz	2017-07-25 15:41	4.5K	Loraine Lab FindJunctions file
H2-94.FJ.bed.gz.tbi	2017-07-25 15:41	4.4K	Tabix index file
C-94.bedgraph.gz.tbi	2017-07-25 15:39	4.2K	BedGraph (wiggle) format file
H2-75.bedgraph.gz	2017-07-25 15:41	4.2K	BedGraph (wiggle) format file
C-94.mm.bedgraph.gz	2017-07-25 15:41	4.2K	BedGraph (wiggle) format file
H1-75.bedgraph.gz.tbi	2017-07-25 15:40	4.1K	BedGraph (wiggle) format file
H1-94.sm.bedgraph.gz.tbi	2017-07-25 15:38	4.1K	BedGraph (wiggle) format file
C-75.FJ.bed.gz	2017-07-25 15:41	3.9K	Loraine Lab FindJunctions file
C-94.sm.bedgraph.gz.tbi	2017-07-25 15:41	3.8K	BedGraph (wiggle) format file
C-75.bedgraph.gz.tbi	2017-07-25 15:40	3.7K	BedGraph (wiggle) format file
H1-75.sm.bedgraph.gz.tbi	2017-07-25 15:38	3.7K	BedGraph (wiggle) format file
H1-94.bed.gz.tbi	2017-07-25 15:38	3.7K	Tabix index file
H2-75.bed.gz	2017-07-25 15:39	3.4K	Annotation or junction file
H1-75.mm.bedgraph.gz	2017-07-25 15:39	3.3K	BedGraph (wiggle) format file
C-94.bed.gz.tbi	2017-07-25 15:39	3.3K	Tabix index file
H1-75.bed.gz.tbi	2017-07-25 15:40	3.2K	Tabix index file
C-75.sm.bedgraph.gz.tbi	2017-07-25 15:38	3.2K	BedGraph (wiggle) format file
C-75.mm.bedgraph.gz	2017-07-25 15:40	3.1K	BedGraph (wiggle) format file
C-75.bed.gz.tbi	2017-07-25 15:38	3.0K	Tabix index file
H1-94.FJ.bed.gz.tbi	2017-07-25 15:38	3.0K	Tabix index file
C-94.FJ.bed.gz.tbi	2017-07-25 15:40	3.0K	Tabix index file
H1-75.FJ.bed.gz.tbi	2017-07-25 15:40	2.9K	Tabix index file
H2-75.sm.bedgraph.gz	2017-07-25 15:40	2.6K	BedGraph (wiggle) format file
C-75.FJ.bed.gz.tbi	2017-07-25 15:41	2.5K	Tabix index file
H2-75.bedgraph.gz.tbi	2017-07-25 15:41	2.3K	BedGraph (wiggle) format file
H2-75.FJ.bed.gz	2017-07-25 15:41	2.3K	Loraine Lab FindJunctions file
H2-75.sm.bedgraph.gz.tbi	2017-07-25 15:39	1.9K	BedGraph (wiggle) format file
H2-75.bed.gz.tbi	2017-07-25 15:41	1.9K	Tabix index file
H2-75.mm.bedgraph.gz	2017-07-25 15:41	1.6K	BedGraph (wiggle) format file
H2-75.FJ.bed.gz.tbi	2017-07-25 15:41	1.6K	Tabix index file
H2-94.mm.bedgraph.gz.tbi	2017-07-25 15:38	1.3K	BedGraph (wiggle) format file
H1-94.mm.bedgraph.gz.tbi	2017-07-25 15:39	1.2K	BedGraph (wiggle) format file
C-75.mm.bedgraph.gz.tbi	2017-07-25 15:39	930	BedGraph (wiggle) format file
C-94.mm.bedgraph.gz.tbi	2017-07-25 15:40	817	BedGraph (wiggle) format file
H1-75.mm.bedgraph.gz.tbi	2017-07-25 15:39	700	BedGraph (wiggle) format file
H2-75.mm.bedgraph.gz.tbi	2017-07-25 15:38	584	BedGraph (wiggle) format file
H2-101.alignments_distribution.txt	2017-07-25 15:41	427	Read alignment distribution
H1-101.alignments_distribution.txt	2017-07-25 15:38	427	Read alignment distribution
H1-76.alignments_distribution.txt	2017-07-25 15:41	406	Read alignment distribution
H2-76.alignments_distribution.txt	2017-07-25 15:40	404	Read alignment distribution
C-101.alignments_distribution.txt	2017-07-25 15:39	390	Read alignment distribution
C-76.alignments_distribution.txt	2017-07-25 15:39	367	Read alignment distribution
H2-94.alignments_distribution.txt	2017-07-25 15:39	314	Read alignment distribution
H1-94.alignments_distribution.txt	2017-07-25 15:40	312	Read alignment distribution
H1-75.alignments_distribution.txt	2017-07-25 15:41	312	Read alignment distribution
H2-75.alignments_distribution.txt	2017-07-25 15:41	309	Read alignment distribution
C-75.alignments_distribution.txt	2017-07-25 15:39	288	Read alignment distribution
C-94.alignments_distribution.txt	2017-07-25 15:38	286	Read alignment distribution