Poplar genome version 3
Files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.
The file named P_trichocarpa_Aug_2012.bed.gz contains data reformatted from:
- ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/annotation/Ptrichocarpa_210_defline.txt
- ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/annotation/Ptrichocarpa_210_gene_exons.gff3.gz
See the annots.xml meta-data file in this directory for description and date of download.
Files with extension .gz were compressed and indexed using bgzip and tabix tools from Heng Li.
The .2bit file contains sequence data reformatted from:
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Ptrichocarpa/assembly/Ptrichocarpa_210.fa.gz
Re-formatting was done using twoBitToFa from http://hgdownload.cse.ucsc.edu/admin/exe/.
![[ICO]](/quickload/styling/icons/blank.svg){kind=icon} | Name | Last modified | Size | Description |
|---|---|---|---|---|
![[PARENTDIR]](/quickload/styling/icons/glyphicon-circle-arrow-up.svg){kind=icon} | Parent Directory | - | ||
![[ ]](/quickload/styling/icons/glyphicon-file.svg){kind=icon} | P_trichocarpa_Aug_2012.2bit | 2019-09-11 14:07 | 104M | Sequence data in blat 2bit format |
![[ ]](/icons/compressed.gif){kind=icon} | P_trichocarpa_Aug_2012.bed.gz | 2019-09-11 14:07 | 3.2M | Annotation or junction file |
| P_trichocarpa_Aug_2012.bed.gz.tbi | 2019-09-11 14:07 | 206K | Tabix index file |
| annots.xml | 2019-09-11 14:07 | 6.4K | Annotation and data file list |
| genome.txt | 2019-09-11 14:07 | 27K | Chromosome lengths and assembly information |