Ficedula albicollis (Jun 2013) collared flycatcher FicAlb1.5 genome assembly (GCF_000247815.1)

The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.

Annotation (bed) files were downloaded from the NCBI ftp site. See the annots.xml meta-data file in this directory for details.

Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.

The file named F_albicollis_Jun_2013.2bit contains sequence data and was converted from a fasta file from the NCBI Web site (GCF_000247815.1_FicAlb1.5_genomic.fna.gz). The file genome.txt lists sequences and their sizes and was made from F_albicollis_Jun_2013.2bit sequence file using twoBitInfo.

Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[   ]F_albicollis_Jun_2013.2bit2021-03-31 17:30 318MSequence data in blat 2bit format
[   ]F_albicollis_Apr_2016.bed.gz2021-03-31 17:30 1.8MAnnotation or junction file
[TXT]genome.txt2021-03-31 17:30 423KChromosome lengths and assembly information
[   ]F_albicollis_Apr_2016.bed.gz.tbi2021-03-31 17:30 57KTabix index file
[TXT]annots.xml2021-03-31 17:30 361 Annotation and data file list