Ficedula albicollis (Jun 2013) collared flycatcher FicAlb1.5 genome assembly (GCF_000247815.1)
The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.
Annotation (bed) files were downloaded from the NCBI ftp site. See the annots.xml meta-data file in this directory for details.
Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.
The file named F_albicollis_Jun_2013.2bit contains sequence data and was converted from a fasta file from the NCBI Web site (GCF_000247815.1_FicAlb1.5_genomic.fna.gz). The file genome.txt lists sequences and their sizes and was made from F_albicollis_Jun_2013.2bit sequence file using twoBitInfo.
Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.
Name | Last modified | Size | Description | |
---|---|---|---|---|
Parent Directory | - | |||
F_albicollis_Jun_2013.2bit | 2021-03-31 17:30 | 318M | Sequence data in blat 2bit format | |
![]() | F_albicollis_Apr_2016.bed.gz | 2021-03-31 17:30 | 1.8M | Annotation or junction file |
genome.txt | 2021-03-31 17:30 | 423K | Chromosome lengths and assembly information | |
F_albicollis_Apr_2016.bed.gz.tbi | 2021-03-31 17:30 | 57K | Tabix index file | |
annots.xml | 2021-03-31 17:30 | 361 | Annotation and data file list |