Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06/BDGP6) genome assembly

The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.

The gene model annotation file (D_melanogaster_Jul_2014.bed.gz) was made from a GTF file downloaded Nov. 22, 2014 from ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06 /gtf.

The file named D_melanogaster_Jul_2014.2bit contains sequence data. It was made from fasta file named dmel-all-chromosome-r6.03.fasta.gz downloaded from ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/fasta. To convert it back to fasta, use twoBitToFa.

The file genome.txt lists sequences and their sizes and was made from D_melanogaster_Jul_2014.2bit sequence file using twoBitInfo.

For more information, see this post at LoraineLab.org.

You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from http://hgdownload.cse.ucsc.edu/admin/exe/.

	Name	Last modified	Size	Description
	Parent Directory		-
	annots.xml	2019-09-11 14:06	822	Annotation and data file list
	D_melanogaster_Jul_2014_ensGene.bed.gz.tbi	2019-09-11 14:06	17K	Tabix index file
	genome.txt	2019-09-11 14:06	39K	Chromosome lengths and assembly information
	D_melanogaster_Jul_2014.bed.gz.tbi	2019-09-11 14:06	60K	Tabix index file
	D_melanogaster_Jul_2014.bed.gz	2019-09-11 14:06	1.1M	Annotation or junction file
	D_melanogaster_Jul_2014_ensGene.bed.gz	2019-09-11 14:06	1.3M	Annotation or junction file
	D_melanogaster_Jul_2014.2bit	2019-09-11 14:06	34M	Sequence data in blat 2bit format