strapdown: '/quickload/styling/strapdown/v/0.2/strapdown.js'}; 
<html>
<title>Integrated Genome Browser QuickLoad Site</title>
<body>
<h1>Welcome to IGB Quickload Main</h1>
<p>
Data available here are configured for visualization
in the <a href="https://bioviz.org">Integrated Genome Browser</a>.
These data include gene annotation files and genome information for 
many plant, animal, and microbial species.</p>
<p>When IGB launches, it contacts a deployed copy of Quickload Main and retrieves
a file "<a href="./contents.txt">contents.txt</a>" that lists all genome assemblies available for
display in IGB.
</p>
<p>
The data here are version-controlled using subversion, a centralized version-control system that
attaches versions to individual files and supports checking out parts of the repository. To browse
the subversion repository hosting these data, visit 
<a href="https://svn.bioviz.org/viewvc/genomes/quickload">https://svn.bioviz.org/viewvc/genomes/quickload/</a>.</p>
<h2>About Quickload</h2>
<p>
A Quickload site is a simple system of directories, sequence files, and
annotation files formatted for visualization in Integrated Genome Browser. It's a convenient
way to share data sets with other labs and with the public. IGB can display the contents of
many Quickload sites at the same time. This makes it easy to compare data across experiments.
This makes IGB an "integrated" genome browser. 
</p>
<h2>About this site</h2>
<p>
This site is a checked-out copy of Quickload Main subversion repository, deployed in the "htdocs" directory
of the apache2 Web server. 
 </p>
<p>
To make the Quickload data contents easy to browse, the repository also includes styling configurations using
javascript and CSS. 
</p>

<h2>How to get a copy</h2> 
<p>Install svn and check out the repository with a read-only user:</p>
<p>`svn co --username=guest https://svn.bioviz.org/repos/genomes/quickload`</p>
<p>When prompted, enter username "guest" and password "guest".</p> 

<h2>Test a checked-out copy in Integrated Genome Browser</h2>
<p>Open Integrated Genome Browser and select <B>Preferences</B> from the <B>File</B> menu. Select the <B>Data Sources</B> tab. Add the checked-out root directory as a new Quickload Data Source. The folder containing the file "contents.txt" is the Quickload root directory.</p>
<h2>Add too big 2bit files</h2>
<p>Some genome sequence files are so large that they are not version-controlled. One such file
is `T_aestivum_Aug_2018.2bit`, a wheat genome assembly sequence file. To enable IGB users to view
sequence data from this genome, add the file to directory `quickload/T_aestivum_Aug_2018`.</p> 
<hr/>
</body>
</html>
[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]D_dama_Nov_2023/2025-03-13 15:27 - Dama dama (Nov 2023) Fallow deer (ASM3311817v1)
[DIR]A_albopictus_Jan_2024/2025-03-11 09:54 - Aedes albopictus (Jan 2024) Asian tiger mosquito (AalbF5)
[DIR]V_cardui_Feb_2021/2025-03-11 09:54 - Vanessa cardui (Feb 2021) painted lady (ilVanCard2.1)
[DIR]H_vulgaris_Apr_2024/2025-03-11 09:54 - Hydra vulgaris (Apr 2024) Swiftwater hydra (HydraT2T_AEP)
[DIR]O_latipes_Jul_2017/2025-03-11 09:54 - Oryzias latipes (Jul 2017) Japanese rice fish (Medaka) (ASM223467v1)
[DIR]G_gallus_Nov_2011/2025-03-06 22:09 - Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0)
[DIR]A_mellifera_Jan_2005/2025-03-06 22:09 - Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )
[DIR]R_norvegicus_Nov_2020/2025-03-06 22:09 - Rattus norvegicus (Nov 2020) rat (mRatBN7.2/rn7)
[DIR]M_musculus_Jun_2020/2025-03-06 22:09 -  
[DIR]D_rerio_Jul_2010/2025-03-06 21:44 - Danio rerio (Jul 2010) zebrafish (danRer7/Zv9)
[DIR]X_tropicalis_Jul_2016/2025-03-06 21:44 -  
[DIR]A_melanoleuca_Dec_2009/2025-03-06 21:44 - Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)
[DIR]M_musculus_Feb_2006/2025-03-06 21:44 - Mus musculus (Feb 2006) mouse (NCBI36/mm8)
[DIR]E_caballus_Sep_2007/2025-03-06 21:44 - Equus caballus (Sep 2007) horse (equCab2)
[DIR]D_rerio_May_2017/2025-03-06 21:44 - Danio rerio (May 2017) zebrafish (GRCz11/danRer11)
[DIR]X_tropicalis_Nov_2009/2025-03-06 21:44 - Xenopus tropicalis JGI 4.2/xenTro3
[DIR]B_taurus_Jun_2014/2025-03-06 16:44 -  
[DIR]C_porcellus_Feb_2008/2025-03-06 16:44 - Cavia porcellus (Feb 2008) guinea pig (cavPor3)
[DIR]M_musculus_Dec_2011/2025-03-06 16:34 - Mus musculus (Dec 2011) mouse (GRCm38/mm10)
[DIR]M_musculus_Jul_2007/2025-03-06 16:34 - Mus musculus (Jul 2007) mouse (NCBI37/mm9)
[DIR]M_musculus_Aug_2005/2025-03-06 16:23 -  
[DIR]C_sabaeus_Mar_2014/2025-03-06 16:23 - Chlorocebus sabaeus (Mar 2014) African green monkey (Chlorocebus_sabaeus 1.1/chlSab2)
[DIR]R_norvegicus_Jul_2014/2025-03-06 16:23 - Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6)
[DIR]R_norvegicus_Mar_2012/2025-03-06 16:13 - Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5)
[DIR]H_sapiens_Feb_2009/2025-03-06 16:13 - Homo sapiens hg19 (Genome Reference Consortium GRCh37)
[DIR]O_aries_Feb_2010/2025-03-06 16:13 - Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)
[DIR]B_taurus_Oct_2011/2025-03-06 16:13 - Bos taurus (cow) bosTau7 Oct 2011 assembly
[DIR]F_catus_Sep_2011/2025-03-06 16:13 - Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)
[DIR]H_sapiens_Mar_2006/2025-03-06 15:53 - Homo sapiens hg18 (Genome Reference Consortium GRCh36)
[TXT]contents.txt2025-03-06 15:53 6.8KAvailable genome assemblies and their titles
[DIR]L_africana_Jul_2009/2025-03-06 15:52 - Loxodonta africana (Jul 2009) elephant (loxAfr3)
[DIR]H_sapiens_May_2004/2025-03-06 15:52 - Homo sapiens hg17 (Genome Reference Consortium GRCh35)
[TXT]synonyms.txt2025-03-06 15:52 725 IGB synonym file
[TXT]species.txt2025-03-06 15:52 737 Taxonomic and common names for species, shown in IGB species menu
[DIR]H_sapiens_T2T_Jan_2022/2025-03-06 15:52 - Homo sapiens T2T hs1 (T2T Consortium T2T-CHM13 v2.0)
[DIR]P_troglodytes_Oct_2010/2025-03-06 15:52 - Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)
[DIR]H_sapiens_Dec_2013/2025-01-08 10:30 - Homo sapiens hg38 (Genome Reference Consortium GRCh38)
[DIR]C_teleta_Jan_2013/2024-12-19 14:29 - Capitella teleta Jan 2013 (Capca1)
[DIR]R_varieornatus_YOKOZUNA-1_Nov_2016/2024-07-13 17:43 - Ramazzottius varieornatus strain YOKOZUNA-1 (Nov 2016) water bear (Rvar_4.0 assembly)
[DIR]D_melanogaster_Aug_2014/2024-06-04 09:49 -  
[DIR]S_lycopersicum_Sep_2019/2024-05-28 13:52 - Solanum lycopersicum (Sep 2019) tomato (SL4.0)
[DIR]S_lycopersicum_Jun_2022/2024-05-28 13:52 -  
[DIR]H_exemplaris_Z151_Apr_2017/2024-05-22 08:19 - Hypsibius exemplaris strain Z151 (Apr 2017) water bear (nHd_3.1 assembly)
[DIR]S_pombe_May_2012/2024-04-09 09:00 - S. pombe (May 2012) fission yeast
[DIR]C_elegans_Feb_2013/2021-09-23 09:45 -  
[DIR]D_melanogaster_Apr_2006/2021-09-23 09:45 - Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)
[DIR]C_elegans_Oct_2010/2021-09-23 09:45 - C. elegans Oct 2010 (WS220/ce10)
[DIR]F_albicollis_Jun_2013/2021-03-31 17:30 -  
[DIR]P_patens_Jan_2018/2021-03-03 10:04 -  
[DIR]L_passim_Apr_2014/2021-02-14 02:20 - Lotmaria passim, strain SF, Crithidia mellificae strain SF, whole genome shotgun sequencing project
[DIR]T_aestivum_Aug_2018/2020-09-28 17:11 - Triticum aestivum (IWGSC v1)
[DIR]C_sativa_CBDRx_Dec_2018/2020-05-27 01:31 -  
[DIR]S_lycopersicum_Feb_2017/2020-03-01 12:09 - Solanum lycopersicum (Feb 2017) tomato (SL3.0)
[DIR]S_cerevisiae_Apr_2011/2020-02-16 00:36 - Budding yeast
[IMG]favicon.ico2019-09-11 14:21 7.1KIcon IGB displays for this data source in the Data Access tab
[DIR]C_albicans_WO-1_Jul_2010/2019-09-11 14:19 - Candida albicans
[DIR]A_thaliana_Apr_2008/2019-09-11 14:16 - Arabidopsis thaliana TAIR8 genome assembly
[DIR]T_kodakaraensis_KOD1_May_2004/2019-09-11 14:16 - Thermococcus kodakaraensis
[DIR]V_carteri_Jul_2010/2019-09-11 14:16 - Volvox
[DIR]V_vinifera_Mar_2010/2019-09-11 14:16 - Wine grape 12x assembly
[DIR]D_magna_Jan_2019/2019-09-11 14:15 -  
[DIR]S_cerevisiae_Jun_2008/2019-09-11 14:15 -  
[DIR]D_pulex_Feb_2011/2019-09-11 14:13 -  
[DIR]S_bicolor_Jan_2009/2019-09-11 14:13 - Sorghum bicolor
[DIR]P_persica_Apr_2010/2019-09-11 14:13 - Peach v1 genome assembly
[DIR]M_truncatula_Mar_2009/2019-09-11 14:13 - Medicago truncatula
[DIR]T_parvula_May_2012/2019-09-11 14:13 - Thellungiella parvula (salt cress) v2, May 2012
[DIR]Y_lipolytica_WSH-Z06_Mar_2014/2019-09-11 14:12 - Yarrowia lipolytica WSH-Z06 (Mar 2014) Assembly GCA_000613155.1
[DIR]N_vectensis_Jun_2007/2019-09-11 14:12 - Nematostella vectensis, starlet sea anemone
[DIR]D_magna_Apr_2010/2019-09-11 14:10 -  
[DIR]G_max_Aug_2010/2019-09-11 14:10 - Soybean Glyma1
[DIR]C_reinhardtii_Nov_2010/2019-09-11 14:10 - Chlamy (an algal genome)
[DIR]T_rubripes_Oct_2011/2019-09-11 14:10 - Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)
[DIR]D_discoideum_Ax4_May_2009/2019-09-11 14:08 - Slime mold
[DIR]O_sativa_japonica_Oct_2011/2019-09-11 14:07 - Rice, japonic variety Os-Nipponbare-Reference-IRGSP-1.0 assembly
[DIR]F_vesca_Sep_2011/2019-09-11 14:07 - Fragaria vesca (woodland strawberry) v1.1
[DIR]P_trichocarpa_Aug_2012/2019-09-11 14:07 - Black cottonwood (poplar)
[DIR]Z_mays_B73_Mar_2010/2019-09-11 14:07 - Zea mays B73 RefGen_v2 assembly
[DIR]T_castaneum_Mar_2008/2019-09-11 14:06 - Tribolium castaneum (March 2008) red flour beetle
[DIR]C_papaya_Aug_2010/2019-09-11 14:06 - Papaya
[DIR]A_gambiae_Feb_2003/2019-09-11 14:06 - Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)
[DIR]D_melanogaster_Jul_2014/2019-09-11 14:06 - Drosophila melanogaster (July 2014) fruit fly (dmel_r6.03_FB2014_06)
[DIR]B_distachyon_Aug_2010/2019-09-11 14:06 - Brachypodium distachyon (a model grass) JGI v1.0 8x assembly
[DIR]Y_lipolytica_PO1f_May_2014/2019-09-11 14:05 - Yarrowia lipolytica PO1f (May 2014) Assembly GCA_000590845.2
[DIR]A_lyrata_Apr_2011/2019-09-11 14:05 - Arabidopsis lyrata JGI v1.0 assembly
[DIR]C_elegans_May_2008/2019-09-11 14:05 - C. elegans May 2008 WS190/ce6
[DIR]Y_lipolytica_CLIB122_Jul_2004/2019-09-11 14:04 - Yarrowia lipolytica CLIB122 (Jul 2004) Assembly GCA_000002525.2
[DIR]R_communis_May_2008/2019-09-11 14:04 - Castor bean
[DIR]E_coli_K12-MG1655_Jan_2012/2019-09-11 14:01 - Escherichia coli K12-MG1655
[DIR]D_pulex_Sep_2016/2019-09-11 14:01 -  
[DIR]A_rostrata_Oct_2016/2019-09-11 14:00 - Anguilla rostrata
[DIR]S_lycopersicum_May_2012/2019-09-11 14:00 - Solanum lycopersicum (May 2012) tomato (SL2.40)
[DIR]A_thaliana_Jun_2009/2019-09-11 13:58 - Arabidopsis thaliana TAIR9, TAIR10 genome assembly
[DIR]M_acuminata_DH_Pahang_Jan_2016/2019-09-11 13:57 - Musa acuminata DH Pahang (Jan 2016) banana (v2)
[DIR]S_tuberosum_DM_Jul_2011/2019-09-11 13:57 -  
[DIR]C_albicans_SC5314_Jun_2014/2019-09-11 13:57 - Candida albicans
[DIR]O_sativa_japonica_Jun_2009/2019-09-11 13:56 - Rice, japonic variety
[DIR]M_domestica_Borkh_Jun_2017/2019-09-11 13:55 -  
[DIR]S_bicolor_Jun_2013/2019-09-11 13:55 - Sorghum bicolor
[DIR]G_max_Jan_2014/2019-09-11 13:55 - Soybean Glyma2
[DIR]C_sativa_DH55_Apr_2014/2019-09-11 13:54 - Camelina, false flax, an oilseed crop
[DIR]S_lycopersicum_Feb_2014/2019-09-11 13:54 - Solanum lycopersicum (Feb 2014) tomato (SL2.50)
[DIR]C_albicans_SC5314_Nov_2008/2019-09-11 13:53 - Candida albicans
[DIR]P_patens_Jan_2008/2019-09-11 13:52 - Physcomitrella patens (moss)
[DIR]P_trichocarpa_Jan_2010/2019-09-11 13:52 - Black cottonwood (poplar)
[DIR]C_albicans_WO-1_Dec_2013/2019-09-11 13:51 - Candida albicans
[DIR]A_gambiae_Oct_2006/2019-09-11 13:51 - Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3)