strapdown: '/quickload/styling/strapdown/v/0.2/strapdown.js'}; 
<html>
<title>Integrated Genome Browser QuickLoad Site</title>
<body>
<h1>Welcome to IGB Quickload Main</h1>
<p>
Data available here are configured for visualization
in the <a href="https://bioviz.org">Integrated Genome Browser</a>.
These data include gene annotation files and genome information for 
many plant, animal, and microbial species.</p>
<p>When IGB launches, it contacts a deployed copy of Quickload Main and retrieves
a file "<a href="./contents.txt">contents.txt</a>" that lists all genome assemblies available for
display in IGB.
</p>
<p>
The data here are version-controlled using subversion, a centralized version-control system that
attaches versions to individual files and supports checking out parts of the repository. To browse
the subversion repository hosting these data, visit 
<a href="https://svn.bioviz.org/viewvc/genomes/quickload">https://svn.bioviz.org/viewvc/genomes/quickload/</a>.</p>
<h2>About Quickload</h2>
<p>
A Quickload site is a simple system of directories, sequence files, and
annotation files formatted for visualization in Integrated Genome Browser. It's a convenient
way to share data sets with other labs and with the public. IGB can display the contents of
many Quickload sites at the same time. This makes it easy to compare data across experiments.
This makes IGB an "integrated" genome browser. 
</p>
<h2>About this site</h2>
<p>
This site is a checked-out copy of Quickload Main subversion repository, deployed in the "htdocs" directory
of the apache2 Web server. 
 </p>
<p>
To make the Quickload data contents easy to browse, the repository also includes styling configurations using
javascript and CSS. 
</p>

<h2>How to get a copy</h2> 
<p>Install svn and check out the repository with a read-only user:</p>
<p>`svn co --username=guest https://svn.bioviz.org/repos/genomes/quickload`</p>
<p>When prompted, enter username "guest" and password "guest".</p> 

<h2>Test a checked-out copy in Integrated Genome Browser</h2>
<p>Open Integrated Genome Browser and select <B>Preferences</B> from the <B>File</B> menu. Select the <B>Data Sources</B> tab. Add the checked-out root directory as a new Quickload Data Source. The folder containing the file "contents.txt" is the Quickload root directory.</p>
<h2>Add too big 2bit files</h2>
<p>Some genome sequence files are so large that they are not version-controlled. One such file
is `T_aestivum_Aug_2018.2bit`, a wheat genome assembly sequence file. To enable IGB users to view
sequence data from this genome, add the file to directory `quickload/T_aestivum_Aug_2018`.</p> 
<hr/>
</body>
</html>
[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]A_gambiae_Oct_2006/2019-09-11 13:51 - Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3)
[DIR]C_albicans_WO-1_Dec_2013/2019-09-11 13:51 - Candida albicans
[DIR]P_trichocarpa_Jan_2010/2019-09-11 13:52 - Black cottonwood (poplar)
[DIR]P_patens_Jan_2008/2019-09-11 13:52 - Physcomitrella patens (moss)
[DIR]C_albicans_SC5314_Nov_2008/2019-09-11 13:53 - Candida albicans
[DIR]S_lycopersicum_Feb_2014/2019-09-11 13:54 - Solanum lycopersicum (Feb 2014) tomato (SL2.50)
[DIR]C_sativa_DH55_Apr_2014/2019-09-11 13:54 - Camelina, false flax, an oilseed crop
[DIR]G_max_Jan_2014/2019-09-11 13:55 - Soybean Glyma2
[DIR]S_bicolor_Jun_2013/2019-09-11 13:55 - Sorghum bicolor
[DIR]M_domestica_Borkh_Jun_2017/2019-09-11 13:55 -  
[DIR]O_sativa_japonica_Jun_2009/2019-09-11 13:56 - Rice, japonic variety
[DIR]C_albicans_SC5314_Jun_2014/2019-09-11 13:57 - Candida albicans
[DIR]S_tuberosum_DM_Jul_2011/2019-09-11 13:57 -  
[DIR]M_acuminata_DH_Pahang_Jan_2016/2019-09-11 13:57 - Musa acuminata DH Pahang (Jan 2016) banana (v2)
[DIR]A_thaliana_Jun_2009/2019-09-11 13:58 - Arabidopsis thaliana TAIR9, TAIR10 genome assembly
[DIR]S_lycopersicum_May_2012/2019-09-11 14:00 - Solanum lycopersicum (May 2012) tomato (SL2.40)
[DIR]A_rostrata_Oct_2016/2019-09-11 14:00 - Anguilla rostrata
[DIR]D_pulex_Sep_2016/2019-09-11 14:01 -  
[DIR]E_coli_K12-MG1655_Jan_2012/2019-09-11 14:01 - Escherichia coli K12-MG1655
[DIR]R_communis_May_2008/2019-09-11 14:04 - Castor bean
[DIR]Y_lipolytica_CLIB122_Jul_2004/2019-09-11 14:04 - Yarrowia lipolytica CLIB122 (Jul 2004) Assembly GCA_000002525.2
[DIR]C_elegans_May_2008/2019-09-11 14:05 - C. elegans May 2008 WS190/ce6
[DIR]A_lyrata_Apr_2011/2019-09-11 14:05 - Arabidopsis lyrata JGI v1.0 assembly
[DIR]Y_lipolytica_PO1f_May_2014/2019-09-11 14:05 - Yarrowia lipolytica PO1f (May 2014) Assembly GCA_000590845.2
[DIR]B_distachyon_Aug_2010/2019-09-11 14:06 - Brachypodium distachyon (a model grass) JGI v1.0 8x assembly
[DIR]D_melanogaster_Jul_2014/2019-09-11 14:06 - Drosophila melanogaster (July 2014) fruit fly (dmel_r6.03_FB2014_06)
[DIR]A_gambiae_Feb_2003/2019-09-11 14:06 - Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)
[DIR]C_papaya_Aug_2010/2019-09-11 14:06 - Papaya
[DIR]T_castaneum_Mar_2008/2019-09-11 14:06 - Tribolium castaneum (March 2008) red flour beetle
[DIR]Z_mays_B73_Mar_2010/2019-09-11 14:07 - Zea mays B73 RefGen_v2 assembly
[DIR]P_trichocarpa_Aug_2012/2019-09-11 14:07 - Black cottonwood (poplar)
[DIR]F_vesca_Sep_2011/2019-09-11 14:07 - Fragaria vesca (woodland strawberry) v1.1
[DIR]O_sativa_japonica_Oct_2011/2019-09-11 14:07 - Rice, japonic variety Os-Nipponbare-Reference-IRGSP-1.0 assembly
[DIR]D_discoideum_Ax4_May_2009/2019-09-11 14:08 - Slime mold
[DIR]T_rubripes_Oct_2011/2019-09-11 14:10 - Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)
[DIR]C_reinhardtii_Nov_2010/2019-09-11 14:10 - Chlamy (an algal genome)
[DIR]G_max_Aug_2010/2019-09-11 14:10 - Soybean Glyma1
[DIR]D_magna_Apr_2010/2019-09-11 14:10 -  
[DIR]N_vectensis_Jun_2007/2019-09-11 14:12 - Nematostella vectensis, starlet sea anemone
[DIR]Y_lipolytica_WSH-Z06_Mar_2014/2019-09-11 14:12 - Yarrowia lipolytica WSH-Z06 (Mar 2014) Assembly GCA_000613155.1
[DIR]T_parvula_May_2012/2019-09-11 14:13 - Thellungiella parvula (salt cress) v2, May 2012
[DIR]M_truncatula_Mar_2009/2019-09-11 14:13 - Medicago truncatula
[DIR]P_persica_Apr_2010/2019-09-11 14:13 - Peach v1 genome assembly
[DIR]S_bicolor_Jan_2009/2019-09-11 14:13 - Sorghum bicolor
[DIR]D_pulex_Feb_2011/2019-09-11 14:13 -  
[DIR]S_cerevisiae_Jun_2008/2019-09-11 14:15 -  
[DIR]D_magna_Jan_2019/2019-09-11 14:15 -  
[DIR]V_vinifera_Mar_2010/2019-09-11 14:16 - Wine grape 12x assembly
[DIR]V_carteri_Jul_2010/2019-09-11 14:16 - Volvox
[DIR]T_kodakaraensis_KOD1_May_2004/2019-09-11 14:16 - Thermococcus kodakaraensis
[DIR]A_thaliana_Apr_2008/2019-09-11 14:16 - Arabidopsis thaliana TAIR8 genome assembly
[DIR]C_albicans_WO-1_Jul_2010/2019-09-11 14:19 - Candida albicans
[IMG]favicon.ico2019-09-11 14:21 7.1KIcon IGB displays for this data source in the Data Access tab
[DIR]S_cerevisiae_Apr_2011/2020-02-16 00:36 - Budding yeast
[DIR]S_lycopersicum_Feb_2017/2020-03-01 12:09 - Solanum lycopersicum (Feb 2017) tomato (SL3.0)
[DIR]C_sativa_CBDRx_Dec_2018/2020-05-27 01:31 -  
[DIR]T_aestivum_Aug_2018/2020-09-28 17:11 - Triticum aestivum (IWGSC v1)
[DIR]L_passim_Apr_2014/2021-02-14 02:20 - Lotmaria passim, strain SF, Crithidia mellificae strain SF, whole genome shotgun sequencing project
[DIR]P_patens_Jan_2018/2021-03-03 10:04 -  
[DIR]F_albicollis_Jun_2013/2021-03-31 17:30 -  
[DIR]C_elegans_Oct_2010/2021-09-23 09:45 - C. elegans Oct 2010 (WS220/ce10)
[DIR]D_melanogaster_Apr_2006/2021-09-23 09:45 - Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5)
[DIR]C_elegans_Feb_2013/2021-09-23 09:45 -  
[DIR]S_pombe_May_2012/2024-04-09 09:00 - S. pombe (May 2012) fission yeast
[DIR]H_exemplaris_Z151_Apr_2017/2024-05-22 08:19 - Hypsibius exemplaris strain Z151 (Apr 2017) water bear (nHd_3.1 assembly)
[DIR]S_lycopersicum_Jun_2022/2024-05-28 13:52 -  
[DIR]S_lycopersicum_Sep_2019/2024-05-28 13:52 - Solanum lycopersicum (Sep 2019) tomato (SL4.0)
[DIR]D_melanogaster_Aug_2014/2024-06-04 09:49 -  
[DIR]R_varieornatus_YOKOZUNA-1_Nov_2016/2024-07-13 17:43 - Ramazzottius varieornatus strain YOKOZUNA-1 (Nov 2016) water bear (Rvar_4.0 assembly)
[DIR]C_teleta_Jan_2013/2024-12-19 14:29 - Capitella teleta Jan 2013 (Capca1)
[DIR]H_sapiens_Dec_2013/2025-01-08 10:30 - Homo sapiens hg38 (Genome Reference Consortium GRCh38)
[DIR]P_troglodytes_Oct_2010/2025-03-06 15:52 - Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)
[DIR]H_sapiens_T2T_Jan_2022/2025-03-06 15:52 - Homo sapiens T2T hs1 (T2T Consortium T2T-CHM13 v2.0)
[TXT]species.txt2025-03-06 15:52 737 Taxonomic and common names for species, shown in IGB species menu
[TXT]synonyms.txt2025-03-06 15:52 725 IGB synonym file
[DIR]H_sapiens_May_2004/2025-03-06 15:52 - Homo sapiens hg17 (Genome Reference Consortium GRCh35)
[DIR]L_africana_Jul_2009/2025-03-06 15:52 - Loxodonta africana (Jul 2009) elephant (loxAfr3)
[TXT]contents.txt2025-03-06 15:53 6.8KAvailable genome assemblies and their titles
[DIR]H_sapiens_Mar_2006/2025-03-06 15:53 - Homo sapiens hg18 (Genome Reference Consortium GRCh36)
[DIR]F_catus_Sep_2011/2025-03-06 16:13 - Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5)
[DIR]B_taurus_Oct_2011/2025-03-06 16:13 - Bos taurus (cow) bosTau7 Oct 2011 assembly
[DIR]O_aries_Feb_2010/2025-03-06 16:13 - Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)
[DIR]H_sapiens_Feb_2009/2025-03-06 16:13 - Homo sapiens hg19 (Genome Reference Consortium GRCh37)
[DIR]R_norvegicus_Mar_2012/2025-03-06 16:13 - Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5)
[DIR]R_norvegicus_Jul_2014/2025-03-06 16:23 - Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6)
[DIR]C_sabaeus_Mar_2014/2025-03-06 16:23 - Chlorocebus sabaeus (Mar 2014) African green monkey (Chlorocebus_sabaeus 1.1/chlSab2)
[DIR]M_musculus_Aug_2005/2025-03-06 16:23 -  
[DIR]M_musculus_Jul_2007/2025-03-06 16:34 - Mus musculus (Jul 2007) mouse (NCBI37/mm9)
[DIR]M_musculus_Dec_2011/2025-03-06 16:34 - Mus musculus (Dec 2011) mouse (GRCm38/mm10)
[DIR]C_porcellus_Feb_2008/2025-03-06 16:44 - Cavia porcellus (Feb 2008) guinea pig (cavPor3)
[DIR]B_taurus_Jun_2014/2025-03-06 16:44 -  
[DIR]X_tropicalis_Nov_2009/2025-03-06 21:44 - Xenopus tropicalis JGI 4.2/xenTro3
[DIR]D_rerio_May_2017/2025-03-06 21:44 - Danio rerio (May 2017) zebrafish (GRCz11/danRer11)
[DIR]E_caballus_Sep_2007/2025-03-06 21:44 - Equus caballus (Sep 2007) horse (equCab2)
[DIR]M_musculus_Feb_2006/2025-03-06 21:44 - Mus musculus (Feb 2006) mouse (NCBI36/mm8)
[DIR]A_melanoleuca_Dec_2009/2025-03-06 21:44 - Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)
[DIR]X_tropicalis_Jul_2016/2025-03-06 21:44 -  
[DIR]D_rerio_Jul_2010/2025-03-06 21:44 - Danio rerio (Jul 2010) zebrafish (danRer7/Zv9)
[DIR]M_musculus_Jun_2020/2025-03-06 22:09 -  
[DIR]R_norvegicus_Nov_2020/2025-03-06 22:09 - Rattus norvegicus (Nov 2020) rat (mRatBN7.2/rn7)
[DIR]A_mellifera_Jan_2005/2025-03-06 22:09 - Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )
[DIR]G_gallus_Nov_2011/2025-03-06 22:09 - Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0)
[DIR]O_latipes_Jul_2017/2025-03-11 09:54 - Oryzias latipes (Jul 2017) Japanese rice fish (Medaka) (ASM223467v1)
[DIR]H_vulgaris_Apr_2024/2025-03-11 09:54 - Hydra vulgaris (Apr 2024) Swiftwater hydra (HydraT2T_AEP)
[DIR]V_cardui_Feb_2021/2025-03-11 09:54 - Vanessa cardui (Feb 2021) painted lady (ilVanCard2.1)
[DIR]A_albopictus_Jan_2024/2025-03-11 09:54 - Aedes albopictus (Jan 2024) Asian tiger mosquito (AalbF5)
[DIR]D_dama_Nov_2023/2025-03-13 15:27 - Dama dama (Nov 2023) Fallow deer (ASM3311817v1)