#!/bin/bash
#PBS -N TrySpp
#PBS -e runTrySpp.log
#PBS -o runTrySpp.log
#PBS -l walltime=50:00:00
#PBS -l nodes=2:ppn=8
#PBS -l vmem=200000mb

# runTrySpp.sh
#
# Created by Ivory on 13 November 2014
#
# This document runs the R mark down script "TrySpp.Rmd"
# Run this script using qsub.
#

# go to the directory where the command was run
cd $PBS_O_WORKDIR

# knit the R markdown
Rscript -e 'lib.loc="/home/ieclabau/src/R/library"; .libPaths(lib.loc); library("knitr"); knit("TrySpp.Rmd")'